Mhc Class I H-2dd Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Class I H-2dd Heavy Chain
  Conformer 1
(PDB) 		1ddh (A)
  Conformer 2
(PDB) 		2vaa (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 176 0.76   4 - 179
2 94 1.06   3 - 3   180 - 272

Sequence


           __3_____________________________________________________________________________________________________________________ 
 1ddh(A) : MSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRANGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 
         :                                                                                                                          
 2vaa(A) : GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 
           __3_____________________________________________________________________________________________________________________ 

           ___________________________________________________174__________________________________________________________________ 
 1ddh(A) : CDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLATDPPKAHVTHHRRPEGDVTLRCWALGFYPAEITLTWQLNGEELTQEMELVETRPAGDGT 
         :                                                                                                                          
 2vaa(A) : CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 
           ___________________________________________________174__________________________________________________________________ 

           __________________________________                                                                                       
 1ddh(A) : FQKWASVVVPLGKQQKYTCHVEHEGLPEPLTLRW                                                                                       
         :                                                                                                                          
 2vaa(A) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRW                                                                                       
           __________________________________                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.5
Translation
(A) 		-1.0
Closure
(%) 		79.7
Bending Residues
( green ) 		  3 - 4
  174 - 180
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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