Mhc Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Heavy Chain
  Conformer 1
(PDB) 		1mi5 (A)
  Conformer 2
(PDB) 		1mi5 (D)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 44 12.54   82 - 125
2 23 8.32   26 - 48

Sequence


           ______________________________________________48________________________________________________________________________ 
 1mi5(A) : GSHSMRYFDTAMSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEG---PEYWDRNTQIFKTNTQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHNQYA 
         :                                                                                                                          
 1mi5(D) : ********************KTTQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLT 
           ______________________________________________30________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1mi5(A) : YDGKDYIALNEDLRSWTAADTAAQITQRKWEAARVAEQDRAYLEGTCVEWLRRYLENGKDTLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAG 
         :                                                                                                                          
 1mi5(D) : FGQGTILTVHPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPS******************* 
           ________________________________________________________________________________________________________________________ 

           ________________________________________                                                                                 
 1mi5(A) : DRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPS                                                                                 
         :                                                                                                                          
 1mi5(D) : ****************************************                                                                                 
           ________________________________________                                                                                 

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		134.6
Translation
(A) 		5.6
Closure
(%) 		100.0
Bending Residues
( green ) 		  48 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download