Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad-Dependent Formate Dehydrogenase (E.C.1.2.1.2)
  Conformer 1
(PDB) 		2nac (A)
  Conformer 2
(PDB) 		2nac (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 190 0.18   146 - 335
2 175 0.26   3 - 145   336 - 367

Sequence


           ________________________________________________________________________________________________________________________ 
 2nac(A) : AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTA 
         :                                                                                                                          
 2nac(B) : AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTA 
           ________________________________________________________________________________________________________________________ 

           ______________________145_______________________________________________________________________________________________ 
 2nac(A) : GIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHAT 
         :                                                                                                                          
 2nac(B) : GIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHAT 
           ______________________145_______________________________________________________________________________________________ 

           ____________________________________________________________________________________________335_________________________ 
 2nac(A) : REDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRP 
         :                                                                                                                          
 2nac(B) : REDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRP 
           ____________________________________________________________________________________________335_________________________ 

           ______________                                                                                                           
 2nac(A) : IRDEYLIVQGGALA                                                                                                           
         :                                                                                                                          
 2nac(B) : IRDEYLIVQGGALA                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.3
Translation
(A) 		0.0
Closure
(%) 		91.2
Bending Residues
( green ) 		  145 - 146
  335 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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