Nicotinate Mononucleotide Adenylyltransferase Nadd

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nicotinate Mononucleotide Adenylyltransferase Nadd
  Conformer 1
(PDB) 		6buv (B)
  Conformer 2
(PDB) 		4ybr (B)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 151 0.76   11 - 129   157 - 193
2 21 3.43   130 - 156

Sequence


           ________________________________________________________________________________________________________________________ 
 6buv(B) : ****RRLGVMGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPWQKGRQVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMSWQG 
         :                                                                                                                          
 4ybr(B) : GAMGRRLGVMGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPW--gRQVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALHPDSELYFTTGADALASIMS--- 
           ________________________________________________________________________________________________________________________ 

           _______129________________________156____________________________________________                                        
 6buv(B) : WEELFELARFVGVSRPG------hITSLLGQLAKDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKRRLYT                                        
         :                                                                                                                          
 4ybr(B) : wEELFELARFVGVSRPGYELRNEHITSLLGQLAKDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKRRLYT                                        
           _______129________________________156____________________________________________                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		42.9
Translation
(A) 		-1.1
Closure
(%) 		82.4
Bending Residues
( green ) 		  129 - 130
  156 - 161
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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