Peptidyl-Prolyl Cis-Trans Isomerase Slyd

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Peptidyl-Prolyl Cis-Trans Isomerase Slyd
  Conformer 1
(PDB) 		4odk (A)
  Conformer 2
(PDB) 		4odn (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 81 0.48   3 - 57   60 - 62   126 - 148
2 62 1.05   58 - 59   63 - 125

Sequence


           _______________________________________________________57_______________________________________________________________ 
 4odk(A) : MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQD---nPMPLTVVAVEGEEVTVDFNHP 
         :                                                                                                                          
 4odn(A) : MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHP 
           _______________________________________________________57_______________________________________________________________ 

           __125_______________________________                                                                                     
 4odk(A) : LAGKDLDFQVEVVKVREATPEELLHGHAHPSGHHHH                                                                                     
         :                                                                                                                          
 4odn(A) : LAGKDLDFQVEVVKVREATPEELLHGHAHP******                                                                                     
           __125_______________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.7
Translation
(A) 		-0.1
Closure
(%) 		71.1
Bending Residues
( green ) 		  57 - 63
  125 - 126
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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