Peptidyl-Prolyl Cis-Trans Isomerase Slyd

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Peptidyl-Prolyl Cis-Trans Isomerase Slyd
  Conformer 1
(PDB) 		4odl (B)
  Conformer 2
(PDB) 		4odk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 88 0.61   3 - 63   122 - 148
2 55 0.65   64 - 121

Sequence


           _____________________________________________________________63_______________________________________________________12 
 4odl(B) : MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHP 
         :                                                                                                                          
 4odk(A) : MKVGQDKVVTIRYTLQVEGEVLDQGELSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQD---nPMPLTVVAVEGEEVTVDFNHP 
           _____________________________________________________________63_______________________________________________________12 

           1___________________________________                                                                                     
 4odl(B) : LAGKDLDFQVEVVKVREATPEELLHGHAHP******                                                                                     
         :                                                                                                                          
 4odk(A) : LAGKDLDFQVEVVKVREATPEELLHGHAHPSGHHHH                                                                                     
           1___________________________________                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.8
Translation
(A) 		-1.4
Closure
(%) 		96.2
Bending Residues
( green ) 		  63 - 64
  121 - 124
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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