Gdp-Mannose-Dependent Alpha-(1-2)-Phosphatidylinositol Mannosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gdp-Mannose-Dependent Alpha-(1-2)-Phosphatidylinositol Mannosyltransferase
  Conformer 1
(PDB) 		2gej (A)
  Conformer 2
(PDB) 		4nc9 (C)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 306 4.18   7 - 133   160 - 367
2 20 7.44   134 - 159

Sequence


           _____________________________________________________________________________________________________________116________ 
 2gej(A) : ***MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAV-----fGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKS 
         :                                                                                                                          
 4nc9(C) : SGAMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIrLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTTKS 
           _____________________________________________________________________________________________________________116________ 

           _______________________________158______________________________________________________________________________________ 
 2gej(A) : LTLSVFQGILRPYHEKIIGRIAVSDLARRWQMEALGSDAVEIPNGVDVASFADAPLLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGH 
         :                                                                                                                          
 4nc9(C) : LTLSVFQGILRPYHE------aVSDLARRWQMEALGSDAVEIPNGVDVASFADAPLLDGYPR---tVLFL--yDEPRKGMAVLLAALPKLVARF----iLIV----eDELREQA----Gh 
           _______________________________158______________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2gej(A) : LRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVS 
         :                                                                                                                          
 4nc9(C) : LRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVS 
           ________________________________________________________________________________________________________________________ 

           _________                                                                                                                
 2gej(A) : GAGIKVQVS                                                                                                                
         :                                                                                                                          
 4nc9(C) : GAGIKVQVS                                                                                                                
           _________                                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		117.0
Translation
(A) 		8.4
Closure
(%) 		95.2
Bending Residues
( green ) 		  116 - 134
  158 - 166
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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