Poly(a) RNA Polymerase Protein Cid1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Poly(a) RNA Polymerase Protein Cid1
  Conformer 1
(PDB) 		4e7x (A)
  Conformer 2
(PDB) 		4e8f (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 208 0.41   48 - 52   87 - 88   93 - 102   169 - 372
2 97 0.72   53 - 86   89 - 92   103 - 168

Sequence


           _____________52________________________________86____92_________________________________________________________________ 
 4e7x(A) : ***HKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMD--dTIALQFYEELIAEGFEGKFLQRARIPIIKLTSDT--gFGASFQCD 
         :                                                                                                                          
 4e8f(A) : PNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSsDTIALQFYEELIAEGFEGKFLQRARIPIIKLTSDTKNGFGASFQCD 
           _____________52________________________________86____92_________________________________________________________________ 

           _____168________________________________________________________________________________________________________________ 
 4e7x(A) : IGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYA 
         :                                                                                                                          
 4e8f(A) : IGFNNRLAIHNTLLLSSYTKLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIPPSQNYSSLGSLLHGFFRFYA 
           _____168________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________                                  
 4e7x(A) : YKFEPREKVVTFRRPDGYLTKQEKGWTSdRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEAPI*                                  
         :                                                                                                                          
 4e8f(A) : YKFEPREKVVTFRRPDGYLTKQEKGWTSdRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEAPIP                                  
           _______________________________________________________________________________________                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.5
Translation
(A) 		-0.2
Closure
(%) 		86.5
Bending Residues
( green ) 		  52 - 55
  86 - 89
  92 - 103
  168 - 171
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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