Putative Phosphonate Binding Protein For Abc Transporter

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Phosphonate Binding Protein For Abc Transporter
  Conformer 1
(PDB) 		5lq5 (A)
  Conformer 2
(PDB) 		5lq8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 172 0.19   4 - 91   120 - 120   126 - 127   155 - 162   170 - 170   172 - 172   193 - 194   203 - 271
2 96 0.25   92 - 119   121 - 125   128 - 154   163 - 169   171 - 171   173 - 192   195 - 202

Sequence


           ________________________________________________________________________________________91_________________________119__ 
 5lq5(A) : NPKVLKVGAIPDQNQDVLDKRFNLFSKELSKQLDVEVKYIPVINYIAAVTGFRTKDLDLVWFGGLSGVQARLQTPNSIVIAQRDIDKEFKSVFVVNKNLELNSISNIKGLKKLKNLRFTF 
         :                                                                                                                          
 5lq8(A) : NPKVLKVGAIPDQNQDVLDKRFNLFSKELSKQLDVEVKYIPVINYIAAVTGFRTKDLDLVWFGGLSGVQARLQTPNSIVIAQRDIDKEFKSVFVVNKNLELNSISNIKGLKKLKNLRFTF 
           ________________________________________________________________________________________91_________________________119__ 

           _125__________________________154_____162____169___________183________________202_______________________________________ 
 5lq5(A) : GSENSTSGRLMPEYFLNQAGVEIKHFKGKKAGFSGSHDATIALVNSGAFDAGALNKQVWENNLKNNPKRTSNLELFWITPEYVDYHWVAQGDLENRFGEGFTKELKSVILNLDIKQKSHK 
         :                                                                                                                          
 5lq8(A) : GSENSTSGRLMPEYFLNQAGVEIKHFKGKKAGFSGSHDATIALVNSGAFDAGALNKQVWENNLKNNPKRTSNLELFWITPEYVDYHWVAQGDLENRFGEGFTKELKSVILNLDIKQKSHK 
           _125__________________________154_____162____169___________183________________202_______________________________________ 

           __________________________________                                                                                       
 5lq5(A) : QILDMFNAKRFIKAESKQYKNIEEIGRKLNKIRL                                                                                       
         :                                                                                                                          
 5lq8(A) : QILDMFNAKRFIKAESKQYKNIEEIGRKLNKI**                                                                                       
           __________________________________                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.7
Translation
(A) 		0.1
Closure
(%) 		48.6
Bending Residues
( green ) 		  91 - 92
  119 - 121
  125 - 128
  154 - 155
  162 - 163
  169 - 173
  183 - 195
  202 - 203
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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