Retinoic Acid Receptor Rxr-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Retinoic Acid Receptor Rxr-Alpha
  Conformer 1
(PDB) 		5mkj (A)
  Conformer 2
(PDB) 		5mh4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 27 4.88   328 - 355
2 26 7.41   284 - 309

Sequence


           ________________________________________________________________________________________________________________________ 
 5mkj(A) : ********************************************************************DMPVERILEAELAVEdPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 
         :                                                                                                                          
 5mh4(A) : KYDVVIIGSGPAGMTAAMYTARSEMKTLLLERGVPGGQMNNTAEIENYPGYETIMGPELSMKMAEPLEGLGVENAYGFVTGIEDHGDYKKIITEDDEFITKSIIIATGANHRKLEIPGEE 
           ________________________________________________________________________________________________________________________ 

           _______309______________________________________________________________________________________________________________ 
 5mkj(A) : LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLL 
         :                                                                                                                          
 5mh4(A) : EYGARGVSYCAVCDGAFFRNQEILVIGGGDSA-VEEALYLTRFGQSVTIMHRRDKLRAQEIIQQRAFKEEKINFIWDSVPMEIKGDDKKIQSVVYKNVKTGEVTEKAFGGIFIYVGLDPV 
           _______134______________________________________________________________________________________________________________ 

           ________________________________________________________________                                                         
 5mkj(A) : LRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP*************************                                                         
         :                                                                                                                          
 5mh4(A) : AEFVSDLGITDEAGWIITDDHMRTNIPGIFAVGDVRQKDFRQITTAVGDGAQAAQEAYKFVVEL                                                         
           ________________________________________________________________                                                         

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		176.9
Translation
(A) 		-6.5
Closure
(%) 		60.4
Bending Residues
( green ) 		  309 - 328
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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