Serum Transferrin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Serum Transferrin
  Conformer 1
(PDB) 		1d3k (A)
  Conformer 2
(PDB) 		1nft (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 161 2.69   6 - 92   247 - 325
2 150 2.26   93 - 246

Sequence


           _________________________________________________________________________________85_____________________________________ 
 1d3k(A) : DKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGL 
         :                                                                                                                          
 1nft(A) : KSVIRWCTVSSPEEKKCNNLRD----LTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQVFEAGLAPYKLKPIAAEVYEHTEGSTTSYYAVAVVKKGTEFTVNDLQGKTSCHTGL 
           _________________________________________________________________________________82_____________________________________ 

           ________________________________________________________________________________________________________________________ 
 1d3k(A) : GRSAGWNIPIG-LLYCDLPE----PRKPLEKAVANFFSGSCAPCADGTDFPQLCQLC---PGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVQHSTIFENLANKADRDQYELLCLDNTRKP 
         :                                                                                                                          
 1nft(A) : GRSAGWNIPIGTLIHRGAIEWEGIESGSVEQAVAKFFSASCVPGA--TIEQKLCRQCKGDPKTKCARNAPYSGYSGAFHCLKDGKGDVAFVKHTTVNENAPDQ--KDEYELLCLDGSRQP 
           ________________________________________________________________________________________________________________________ 

           _________246__________________________________________________________________________________________                   
 1d3k(A) : VDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKD-----LLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTC                   
         :                                                                                                                          
 1nft(A) : VDNYKTCNWARVAAHAVVARDDNKVED-IWSFLSKAQSDFGVDTKSDFHLFGPPGKKDPVLKDLLFKDSAIMLKRVPSLMDSQLYLGFEYYSAIQSMR****                   
           _________247__________________________________________________________________________________________                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		50.8
Translation
(A) 		-1.5
Closure
(%) 		89.8
Bending Residues
( green ) 		  85 - 94
  246 - 247
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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