Spac19a8.12 Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Spac19a8.12 Protein
  Conformer 1
(PDB) 		2qkm (B)
  Conformer 2
(PDB) 		2qkm (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 109 1.12   95 - 231
2 89 2.29   3 - 94

Sequence


           __________________________________________________________________________________________92____________________________ 
 2qkm(B) : MSFTNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKAS 
         :                                                                                                                          
 2qkm(D) : MSFTNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHC---wKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLV------ 
           __________________________________________________________________________________________92____________________________ 

           ________________________________________________________________________________________________________________________ 
 2qkm(B) : SGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQTMKNKFYMVIPFLAPLKKWIKKRNIAN 
         :                                                                                                                          
 2qkm(D) : --wGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESR-------iEWHNLMDLPT-------------yMVIPFLAPLKKWI******* 
           ________________________________________________________________________________________________________________________ 

           __________________________                                                                                               
 2qkm(B) : NTTKEKNISVDVDADASSQLLSLLKS                                                                                               
         :                                                                                                                          
 2qkm(D) : **************************                                                                                               
           __________________________                                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		135.9
Translation
(A) 		9.2
Closure
(%) 		31.0
Bending Residues
( green ) 		  92 - 98
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download