Sugar Abc Transporter, Periplasmic Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sugar Abc Transporter, Periplasmic Sugar-Binding Protein
  Conformer 1
(PDB) 		2qvc (A)
  Conformer 2
(PDB) 		3c6q (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 148 0.68   134 - 265   312 - 331
2 139 0.52   34 - 133   266 - 311

Sequence


           ___________________________________________________________________________________________________132__________________ 
 2qvc(A) : *LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQ-lESFIAEGVNGIAIAPSDPTAVIPTIKKALE-gIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLI-kELL 
         :                                                                                                                          
 3c6q(A) : MLTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKCDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELL 
           ___________________________________________________________________________________________________102__________________ 

           _______________________________________________________________________________________________________________265______ 
 2qvc(A) : GGKGKVVIGTGSLTA-nSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQAT-gQRPY- 
         :                                                                                                                          
 3c6q(A) : GGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDCEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYM 
           _______________________________________________________________________________________________________________235______ 

           ____________________________________309__________________________                                                        
 2qvc(A) : -gYLSVTVLYL-nKIGVQNTL--lPKVKVDGKVDYVIDTGVDVVTPENLDEYLKK-eELGIPI**                                                        
         :                                                                                                                          
 3c6q(A) : MGYLSVTVLYLMNKIGVQNTLMMLPKVKVDGKVDYVIDTGVDVVTPENLDEYLKKMEELGIPIKF                                                        
           ____________________________________279__________________________                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		37.9
Translation
(A) 		1.1
Closure
(%) 		66.7
Bending Residues
( green ) 		  132 - 135
  265 - 267
  309 - 314
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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