Sugar Abc Transporter, Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sugar Abc Transporter, Sugar-Binding Protein
  Conformer 1
(PDB) 		2heu (A)
  Conformer 2
(PDB) 		2i58 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 227 0.8   106 - 108   127 - 291   341 - 399
2 154 0.38   19 - 105   109 - 126   292 - 340

Sequence


           ____________________________________________________________________________________________105_________________125_____ 
 2heu(A) : LFQGPSSTVTIEYFNQKKEMTKTLEEITRDFEKENPKIKvKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYG 
         :                                                                                                                          
 2i58(A) : ******STVTIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYG 
           _____________________________________________________________________________________________92_________________112_____ 

           ________________________________________________________________________________________________________________________ 
 2heu(A) : IYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGD 
         :                                                                                                                          
 2i58(A) : IYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGD 
           ________________________________________________________________________________________________________________________ 

           _____________________________________290_______________________________________________340______________________________ 
 2heu(A) : VLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPLAGMTEYAFTDRHLVWLQQYWTSEA 
         :                                                                                                                          
 2i58(A) : VLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPLAGMTEYAFTDRHLVWLQQYWTSEA 
           _____________________________________277_______________________________________________327______________________________ 

           _______________________________                                                                                          
 2heu(A) : DFHTLTMNYVLTGDKQGMVNDLNAFFNPMKM                                                                                          
         :                                                                                                                          
 2i58(A) : DFHTLTMNYVLTGDKQGMVNDLNAFFNPMKM                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.6
Translation
(A) 		0.3
Closure
(%) 		97.8
Bending Residues
( green ) 		  105 - 112
  125 - 128
  290 - 293
  340 - 346
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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