DynDom - Protein Domain Motions

T-Complex Protein 1 Subunit Zeta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	T-Complex Protein 1 Subunit Zeta
Conformer 1 (PDB)	6ks6 (Z)
Conformer 2 (PDB)	5gw5 (Z)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	367	1.6	7 - 177 190 - 211 213 - 217 359 - 363 365 - 365 372 - 375 378 - 536
2	163	2.65	178 - 189 212 - 212 218 - 358 364 - 364 366 - 371 376 - 377

Sequence

`________________________________________________________________________________________________________________________` `6ks6(Z) : SLQLLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDG` `:` `5gw5(Z) : **LLNPKAESLRRDAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDG` `________________________________________________________________________________________________________________________` `_____________________________________________________177___183_________________________211___217________________________` `6ks6(Z) : FEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLE` `:` `5gw5(Z) : FEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLE` `_____________________________________________________177___183_________________________211___217________________________` `__________________________________________________________________________________________________________________358__3` `6ks6(Z) : YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE` `:` `5gw5(Z) : YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE` `__________________________________________________________________________________________________________________358__3` `63_____371_375__________________________________________________________________________________________________________` `6ks6(Z) : EKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQ` `:` `5gw5(Z) : EKFTYVTENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQ` `63_____371_375__________________________________________________________________________________________________________` `__________________________________________________________` `6ks6(Z) : DSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGRS` `:` `5gw5(Z) : DSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGR` `__________________________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	20.6
Translation (A)	-0.4
Closure (%)	88.9
Bending Residues ( green )	177 - 178 183 - 194 211 - 213 217 - 218 358 - 359 363 - 366 371 - 372 375 - 378
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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