Thermolysin (E.C.3.4.24.27)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Thermolysin (E.C.3.4.24.27)
  Conformer 1
(PDB) 		1lnb (E)
  Conformer 2
(PDB) 		1l3f (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 207 0.44   37 - 39   78 - 96   115 - 121   123 - 124   131 - 132   137 - 180   185 - 314
2 105 0.46   3 - 36   40 - 77   97 - 114   122 - 122   125 - 130   133 - 136   181 - 184

Sequence


           __________________________________36_39____________________________________77_________________96_______________114____12 
 1lnb(E) : ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGDGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSEM 
         :                                                                                                                          
 1l3f(E) : ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGDGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSEM 
           __________________________________36_39____________________________________77_________________96_______________114____12 

           1_____129____136________________________________________179__184________________________________________________________ 
 1lnb(E) : VYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKA 
         :                                                                                                                          
 1l3f(E) : VYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKA 
           1_____129____136________________________________________179__184________________________________________________________ 

           ____________________________________________________________________________                                             
 1lnb(E) : AYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK                                             
         :                                                                                                                          
 1l3f(E) : AYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK                                             
           ____________________________________________________________________________                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.5
Translation
(A) 		0.1
Closure
(%) 		94.1
Bending Residues
( green ) 		  36 - 37
  39 - 40
  77 - 78
  96 - 97
  114 - 115
  121 - 125
  129 - 133
  136 - 137
  179 - 182
  184 - 185
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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