Triosephosphate Isomerase Glycosomal

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Triosephosphate Isomerase Glycosomal
  Conformer 1
(PDB) 		2j24 (B)
  Conformer 2
(PDB) 		1trd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 210 0.54   4 - 126   143 - 166   186 - 248
2 35 0.66   127 - 142   167 - 185

Sequence


           ________________________________________________________________________________________________________________________ 
 2j24(B) : SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGF 
         :                                                                                                                          
 1trd(A) : SKPQPIAAANWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAIAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGF 
           ________________________________________________________________________________________________________________________ 

           __126_____________142_____________________166________________185________________________________________________________ 
 2j24(B) : MVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE 
         :                                                                                                                          
 1trd(A) : MVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE 
           __126_____________142_____________________166________________185________________________________________________________ 

           _________                                                                                                                
 2j24(B) : FVDIIKATQ                                                                                                                
         :                                                                                                                          
 1trd(A) : FVDIIKATQ                                                                                                                
           _________                                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		7.2
Translation
(A) 		0.3
Closure
(%) 		0.8
Bending Residues
( green ) 		  126 - 127
  142 - 144
  166 - 167
  185 - 186
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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