Tumor Necrosis Factor Receptor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tumor Necrosis Factor Receptor
  Conformer 1
(PDB) 		1ncf (A)
  Conformer 2
(PDB) 		1ncf (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 81 0.32   16 - 96
2 52 0.61   97 - 148

Sequence


           ____________________________________________________________________________________96__________________________________ 
 1ncf(A) : MDSVCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQ 
         :                                                                                                                          
 1ncf(B) : ***VCPQGKYIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQ 
           ____________________________________________________________________________________96__________________________________ 

           _________________________                                                                                                
 1ncf(A) : EKQNTVCTCHAGFFLRENEC*****                                                                                                
         :                                                                                                                          
 1ncf(B) : EKQNTVCTCHAGFFLRENECVSCSN                                                                                                
           _________________________                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.3
Translation
(A) 		0.2
Closure
(%) 		81.2
Bending Residues
( green ) 		  96 - 97
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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