Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-Galactose 4-Epimerase
  Conformer 1
(PDB) 		1ek6 (A)
  Conformer 2
(PDB) 		4wok (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 288 1.83   6 - 224   231 - 234   237 - 295   310 - 334
2 22 1.12   225 - 230   235 - 236   296 - 309

Sequence


           ________________________________________________________________________________________________________________________ 
 1ek6(A) : MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 
         :                                                                                                                          
 4wok(A) : *ANNVLVVGGAGFIGSHTAKLLAGQGYAPVVYDNLSTGHQSAV--------------RWGDFVEGDILDQARLVETMEKYAPVAVIHFAASAYVGESVEDPAKYYRNNVGGTQSLLDACR 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________224___230________ 
 1ek6(A) : AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGE--DPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV 
         :                                                                                                                          
 4wok(A) : LTRTQNVIFSSSCATYGVPSRLPIGEGEAQNP-INPYGRTKLIAEHMLADYAVA-YGLRYVALRYFNASGADIDGELGEKHDPE---THLIPRAMMAAAGRLDVLEVYGDDYETPDGTCI 
           _______________________________________________________________________________________________________208___214________ 

           ____________________________________________________293_____________309______________________________________            
 1ek6(A) : RDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGW-TAALGLDRMCEDLWRWQKQNPSGFGT            
         :                                                                                                                          
 4wok(A) : RDYIHVTDLARAHVLAVEHLKEAGGNLAVNLGTGRGTSIREIVQSIGRLTGRSVPVAMRARRAGDPPALYADPALAAEKLGFHTVYSDLDTIIRTAAPHFGLEVR****            
           ____________________________________________________277_____________293______________________________________            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		28.9
Translation
(A) 		0.5
Closure
(%) 		71.8
Bending Residues
( green ) 		  224 - 225
  230 - 231
  233 - 241
  293 - 298
  309 - 310
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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