Virb11 Homolog

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Virb11 Homolog
  Conformer 1
(PDB) 		1nlz (D)
  Conformer 2
(PDB) 		1opx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 178 0.65   134 - 177   183 - 315   321 - 325
2 115 0.4   27 - 133   178 - 182   316 - 320

Sequence


           ________________________________________________________________________________________________________________________ 
 1nlz(D) : ****DKKFLEVERALKEAALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDET 
         :                                                                                                                          
 1opx(A) : LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDET 
           ________________________________________________________________________________________________________________________ 

           __132__________________________________________177_181__________________________________________________________________ 
 1nlz(D) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
         :                                                                                                                          
 1opx(A) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
           __132__________________________________________177_181__________________________________________________________________ 

           _____________________________________________________________315__320_________                                           
 1nlz(D) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIKH                                           
         :                                                                                                                          
 1opx(A) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIK*                                           
           _____________________________________________________________315__320_________                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.3
Translation
(A) 		-0.3
Closure
(%) 		69.2
Bending Residues
( green ) 		  132 - 134
  177 - 178
  181 - 183
  315 - 316
  320 - 321
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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