Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB) 		1a29 (A)
  Conformer 2
(PDB) 		1ahr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 71 0.76   5 - 75
2 63 0.72   82 - 144

Sequence


           _______________________________________________________________________73_______________________________________________ 
 1a29(A) : **QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 1ahr(A) : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKD--SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 
           _______________________________________________________________________73_______________________________________________ 

           ____________________________                                                                                             
 1a29(A) : VDEMIREADIDGDGQVNYEEFVQMMT**                                                                                             
         :                                                                                                                          
 1ahr(A) : VDEMIREADIDGDGQVNYEEFVTMMTSK                                                                                             
           ____________________________                                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		136.2
Translation
(A) 		-5.9
Closure
(%) 		23.2
Bending Residues
( green ) 		  73 - 86
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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