DynDom - Protein Domain Motions

Glycerol Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glycerol Kinase
Conformer 1 (PDB)	1glj (O)
Conformer 2 (PDB)	1gla (G)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	246	0.68	8 - 114 117 - 119 131 - 193 198 - 203 211 - 245 248 - 254 272 - 274 433 - 461
2	237	0.87	115 - 116 120 - 130 194 - 197 204 - 210 246 - 247 255 - 271 275 - 432 462 - 497

Sequence

`______________________________________________________________________________________________________________114__119__` `1glj(O) : EKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSWTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLE` `:` `1gla(G) : **KYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHLKRDGLE` `______________________________________________________________________________________________________________114__119__` `______130____________________________________________________________193_197___203____210____________________________245` `1glj(O) : DYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNIGtRIPISGIAGD` `:` `1gla(G) : DYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDIPREMLPEVRRSSEVYGQTNI---iPISGIAGD` `______130____________________________________________________________193_197___203____210____________________________245` `______254______________271______________________________________________________________________________________________` `1glj(O) : QQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIF` `:` `1gla(G) : QQAALFGQLCVKEGMAKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIF` `______254______________271______________________________________________________________________________________________` `________________________________________________________________432__________________________461________________________` `1glj(O) : GLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAG` `:` `1gla(G) : GLTRGVNANHIIRATLESIAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAG` `________________________________________________________________432__________________________461________________________` `______________` `1glj(O) : WKKAVKRAMAWEEH` `:` `1gla(G) : WKKAVKRAMAWEEH` `______________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	6.0
Translation (A)	-0.3
Closure (%)	99.8
Bending Residues ( green )	114 - 117 119 - 120 130 - 131 193 - 194 197 - 198 203 - 204 210 - 211 245 - 248 254 - 255 271 - 272 274 - 275 432 - 439 461 - 462
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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