Glycine Betaine/carnitine/choline-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycine Betaine/carnitine/choline-Binding Protein
  Conformer 1
(PDB) 		3ppn (A)
  Conformer 2
(PDB) 		3r6u (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 157 0.54   34 - 105   109 - 134   241 - 299
2 109 0.6   106 - 108   135 - 240

Sequence


           _______________________________________________________________________105__________________________134_________________ 
 3ppn(A) : DTIKIGAQSMTESEIVANMIAQLIEHDTDLNTALVKNLGSNYVQHQAMLGGDIDISATRYSGTDLTSTLGKEAEKDPKKALNIVQNEFQKRFSYKWFDSYGFDNTYAFTVTKKFAEKEHI 
         :                                                                                                                          
 3r6u(A) : QTIKIGAQSMSESEIIASMLGQLIEHHTDLKTTTIKNLGSNAVQQQALMNGEIDIAATRYTGDALTGTLRMEPEKDPDKALALTQREFKKRYDLKWYDSYGFDNTYAFTVSKELADQYHL 
           ________________________________________________________________________85_88_______________________114_________________ 

           ______________________________________________________________________________________240_______________________________ 
 3ppn(A) : NTVSDLKKNASQYKLGVDNAWLKRKGDGYKGFVSTYGFEFGTTYPMQIGLVYDAVKNGKMDAVLAYSTDGRIKAYDLKILKDDKRFFPPYDCSPVIPEKVLKEHPELEGVINKLIGQIDT 
         :                                                                                                                          
 3r6u(A) : ETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPMQIGLVYDAVKSGKMDIVLAYSTDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKVLKEHPELEGIIKKMLGKIDT 
           ______________________________________________________________________________________220_______________________________ 

           ________________________________                                                                                         
 3ppn(A) : ETMQELNYEVDGKLKEPSVVAKEFLEKHHY**                                                                                         
         :                                                                                                                          
 3r6u(A) : ATMQELNYEVDGNLKEPSVVAKEYLEKHRYFE                                                                                         
           ________________________________                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.8
Translation
(A) 		-0.1
Closure
(%) 		96.6
Bending Residues
( green ) 		  105 - 106
  108 - 109
  134 - 135
  240 - 241
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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