Gtp:amp Phosphotransferase Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gtp:amp Phosphotransferase Mitochondrial
  Conformer 1
(PDB) 		1zd8 (A)
  Conformer 2
(PDB) 		4ake (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 125 4.18   11 - 37   69 - 124   161 - 202
2 31 0.87   38 - 68
3 36 0.8   125 - 160

Sequence


           ______________________________37_____________________________68_______________________________________________________12 
 1zd8(A) : LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHEL-KNLTQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQR 
         :                                                                                                                          
 4ake(B) : *MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 
           ______________________________31_____________________________62_______________________________________________________12 

           4_________________________________160__________________________________________________________                          
 1zd8(A) : LTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTKVPQ*                          
         :                                                                                                                          
 4ake(B) : IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG                          
           0_________________________________156__________________________________________________________                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		38.0
Translation
(A) 		1.5
Closure
(%) 		98.7
Bending Residues
( green ) 		  37 - 39
  68 - 69
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		39.7
Translation
(A) 		0.6
Closure
(%) 		97.5
Bending Residues
( green ) 		  124 - 125
  160 - 161
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download