Hypothetical Oxidoreductase Yqhd

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Oxidoreductase Yqhd
  Conformer 1
(PDB) 		1oj7 (A)
  Conformer 2
(PDB) 		1oj7 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 42 0.71   7 - 12   19 - 25   37 - 56   136 - 140   174 - 174   251 - 253
2 220 0.39   0 - 6   13 - 18   175 - 249   254 - 385
3 120 0.41   26 - 36   57 - 135   144 - 173

Sequence


           ________6____12___17______25_________36__________________56_____________________________________________________________ 
 1oj7(A) : KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPW 
         :                                                                                                                          
 1oj7(C) : KAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTKFIAAAANYPENIDPW 
           ________6____12___17______25_________36__________________56_____________________________________________________________ 

           _______________135_139________________________________174_______________________________________________________________ 
 1oj7(A) : HILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN 
         :                                                                                                                          
 1oj7(C) : HILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTLIEDGPKALKEPEN 
           _______________135_139________________________________174_______________________________________________________________ 

           _________249_253________________________________________________________________________________________________________ 
 1oj7(A) : YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALL 
         :                                                                                                                          
 1oj7(C) : YDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALL 
           _________249_253________________________________________________________________________________________________________ 

           ______________________________                                                                                           
 1oj7(A) : KKLEEHGMTQLGENHDITLDVSRRIYEAAR                                                                                           
         :                                                                                                                          
 1oj7(C) : KKLEEHGMTQLGENHDITLDVSRRIYEAAR                                                                                           
           ______________________________                                                                                           

Morph

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 8.8 -0.2 87.0   6 - 8   12 - 13   17 - 19   174 - 175   249 - 251   253 - 256 Bending Region Analysis
1 3 6.7 -0.1 93.3   25 - 29   36 - 37   56 - 58   135 - 136   139 - 149   173 - 174 Bending Region Analysis
2 3 13.7 0.5 99.9   173 - 175 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification: Hinge

PyMOL Script

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