L-Alanine Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name L-Alanine Dehydrogenase
  Conformer 1
(PDB) 		1pjb (A)
  Conformer 2
(PDB) 		1pjc (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 327 0.23   7 - 234   249 - 266   275 - 355
2 22 1.41   235 - 248   267 - 274

Sequence


           ________________________________________________________________________________________________________________________ 
 1pjb(A) : MEIGVPKEIKNQEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVE 
         :                                                                                                                          
 1pjc(A) : MEIGVPKEIKNQEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVE 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________________233_______ 
 1pjb(A) : LPNRSLPLLTPMSIIAGRLSVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 
         :                                                                                                                          
 1pjc(A) : LPNRSLPLLTPMSIIAGRLSVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 
           ______________________________________________________________________________________________________________233_______ 

           _____248__________261__________274______________________________________________________________________________________ 
 1pjb(A) : PGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKLANQGLKALETDDALAKGLNVQAHRLVHPAVQQVFPDL 
         :                                                                                                                          
 1pjc(A) : PGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKLANQGLKALETDDALAKGLNVQAHRLVHPAVQQVFPDL 
           _____248__________261__________274______________________________________________________________________________________ 

           _                                                                                                                        
 1pjb(A) : A                                                                                                                        
         :                                                                                                                          
 1pjc(A) : A                                                                                                                        
           _                                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		13.8
Translation
(A) 		0.1
Closure
(%) 		84.7
Bending Residues
( green ) 		  233 - 235
  248 - 250
  261 - 267
  274 - 277
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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