Nuclear Valosin-Containing Protein-Like

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nuclear Valosin-Containing Protein-Like
  Conformer 1
(PDB) 		2x8a (A)
  Conformer 2
(PDB) 		2ce7 (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 152 2.94   585 - 746
2 71 1.7   747 - 833

Sequence


           ________________________________________________________________________________________________________________________ 
 2x8a(A) : ***********IGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPsVR 
         :                                                                                                                          
 2ce7(E) : pSGNKRVTFKDVGGAEEAIEELK-EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHeR 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________746________________________________________________________________________ 
 2x8a(A) : --VVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMlKVSHKHFE 
         :                                                                                                                          
 2ce7(E) : EQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN---KPLAEDVNLEIIAK--RTPGFVGADLENLVNEAALLAAREGRDKITMKDFE 
           _____________________________________________328________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2x8a(A) : EAFKKVRSSI************************************************************************************************************** 
         :                                                                                                                          
 2ce7(E) : EAIDRVIAlLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIkYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEIARNMVCQLGMSEELGPLAWGKlRNYSEEVAS 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________                                                                      
 2x8a(A) : ***************************************************                                                                      
         :                                                                                                                          
 2ce7(E) : KIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEKETIEGDELRRILS                                                                      
           ___________________________________________________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		37.1
Translation
(A) 		-0.2
Closure
(%) 		57.5
Bending Residues
( green ) 		  746 - 747
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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