DynDom - Protein Domain Motions

Pa1221

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Pa1221
Conformer 1 (PDB)	4dg8 (A)
Conformer 2 (PDB)	4dg9 (A)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	434	1.17	19 - 419 429 - 430 436 - 436 439 - 446 461 - 482
2	54	1.02	420 - 428 431 - 435 437 - 438 447 - 460 483 - 510

Sequence

`________________________________________________________________________________________________________________________` `4dg8(A) : QNSLLDLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPT` `:` `4dg9(A) : NSLLDLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPT` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4dg8(A) : PANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADS` `:` `4dg9(A) : PANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADS` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4dg8(A) : AWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRN` `:` `4dg9(A) : AWLTASLFNTLVDLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRN` `________________________________________________________________________________________________________________________` `__________________________________________419______428____435________446___________460___________________482____________` `4dg8(A) : DAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQLPTWQRPHACVRVEALPL` `:` `4dg9(A) : DAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQLPTWQRPHACVRVEALPL` `__________________________________________419______428____435________446___________460___________________482____________` `________________________________________________________________________________________________` `4dg8(A) : T----lDRAALLRRLEEPL****************************************************************************` `:` `4dg9(A) : TAHGKLDRAALLRRLElDPDQRGCAQLWSELLGCEVGAdFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQFSRLLRSHGLAPERLLE` `________________________________________________________________________________________________`

Morph

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Status: Initialising

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	11.7
Translation (A)	-0.7
Closure (%)	11.7
Bending Residues ( green )	419 - 420 428 - 431 435 - 439 446 - 447 460 - 461 482 - 483
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

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