Pcra

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Pcra
  Conformer 1
(PDB) 		1pjr (A)
  Conformer 2
(PDB) 		3pjr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 205 2.72   33 - 35   254 - 257   283 - 385   541 - 648
2 267 1.0   6 - 32   36 - 253   258 - 282
3 143 2.8   386 - 540

Sequence


           ____________________________30___35_____________________________________________________________________________________ 
 1pjr(A) : MNFLSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 
         :                                                                                                                          
 3pjr(A) : ***LSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 
           ____________________________30___35_____________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1pjr(A) : QLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKR---yYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLA 
         :                                                                                                                          
 3pjr(A) : QLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLA 
           ________________________________________________________________________________________________________________________ 

           __________253_257______________________282______________________________________________________________________________ 
 1pjr(A) : ERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRT 
         :                                                                                                                          
 3pjr(A) : ERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRT 
           __________253_257______________________282______________________________________________________________________________ 

           _______________378______________________________________________________________________________________________________ 
 1pjr(A) : NAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTID------------lFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSV 
         :                                                                                                                          
 3pjr(A) : NAQSRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSV 
           _______________378______________________________________________________________________________________________________ 

           ________________________________________________________539_____________________________________________________________ 
 1pjr(A) : TELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALIS----------gDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRL 
         :                                                                                                                          
 3pjr(A) : TELVEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDEtEQAAEGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNRSLEDDDEMEEERRL 
           ________________________________________________________539_____________________________________________________________ 

           _________________________________________________                                                                        
 1pjr(A) : AYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETASR*                                                                        
         :                                                                                                                          
 3pjr(A) : AYVGITRAEEELVLTSAQMRTLFGNIQMDPPSRFLNEIPAHLLETASRR                                                                        
           _________________________________________________                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.5
Translation
(A) 		0.5
Closure
(%) 		82.0
Bending Residues
( green ) 		  30 - 33
  35 - 36
  253 - 254
  257 - 258
  282 - 283
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		141.9
Translation
(A) 		7.4
Closure
(%) 		23.7
Bending Residues
( green ) 		  378 - 387
  539 - 557
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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