Phosphomannomutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphomannomutase
  Conformer 1
(PDB) 		1k35 (A)
  Conformer 2
(PDB) 		1p5d (X)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 354 0.55   12 - 283   285 - 285   288 - 366   374 - 375   403 - 410   418 - 418
2 87 0.61   284 - 284   286 - 287   367 - 373   376 - 402   411 - 417   419 - 461

Sequence


           ________________________________________________________________________________________________________________________ 
 1k35(A) : LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVG-vPTPVLYYAANVLEGKSGV-lTGhNPPDYNGFKIVVAGETLANE 
         :                                                                                                                          
 1p5d(X) : LPASIFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGhNPPDYNGFKIVVAGETLANE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1k35(A) : QIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIA-aKP-kVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVG 
         :                                                                                                                          
 1p5d(X) : QIQALRERIEKNDLASGVGSVEQVDILPRYFKQIRDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVG 
           ________________________________________________________________________________________________________________________ 

           _______________________________283________________________________________________________________________________366___ 
 1k35(A) : VVTNTGTIIYPDRLL-lFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPV-wKTGHSLIKKK-kETGALLAGE-sGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPS 
         :                                                                                                                          
 1p5d(X) : VVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWKTGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSEHVFSAFPS 
           _______________________________283________________________________________________________________________________366___ 

           _373_________________________401_____409_____417______________________________________________                           
 1k35(A) : DISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF                           
         :                                                                                                                          
 1p5d(X) : DISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELERIKTVFRNQLKAVDSSLPVPF                           
           _373_________________________401_____409_____417______________________________________________                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.3
Translation
(A) 		0.3
Closure
(%) 		83.1
Bending Residues
( green ) 		  283 - 289
  366 - 367
  373 - 376
  401 - 403
  409 - 411
  417 - 419
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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