Phosphoglucosamine Mutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglucosamine Mutase
  Conformer 1
(PDB) 		3i3w (A)
  Conformer 2
(PDB) 		3pdk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 388 2.38   5 - 370   373 - 375   398 - 398   403 - 433
2 23 0.92   371 - 372   389 - 397   399 - 402   434 - 441

Sequence


           ________________________________________________________________________________________________________________________ 
 3i3w(A) : *KYFGTDGIRGEVANSTITVEFTQKLGNAVGSLINQK-NYPKFVIVGQDTRSSGGFLKFALVSGLNAAGIDVLDLGVVPTPVVAFtVKH-RAAAGFVITA-hNKFTDNGIKLFSSNGFKL 
         :                                                                                                                          
 3pdk(A) : GKYFGTDGVRG-VANKELTPELAFKIGRFGGYVLTKDTDRPK-VIIGRDTRISGHMLEGALVAGLLSTGAEVMRLGVISTPGVAYLTKALDAQAGVMISASHNPVQDNGIKFFGSDGFKL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3i3w(A) : DDALEEEVE---DiDGDFIYQPQ-FKFGSYKILANAIDEYIESIYSRFAKFVNYKG-KVVVDCAHGAASHNFEALLDKFGINYVSIASNPDGLNINVGCGATCVSNIKKAVKEQKADLGI 
         :                                                                                                                          
 3pdk(A) : TDEQEAEIEALLDKEVDELPRPTGTNLGQVSDYFEGGQKYLQYIKQTVEE--DFSGLHIALDCAHGATSSLAPYLFADLEADISTMGTSPNGMNINDGVGSTHPEVLAELVKEKGADIGL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3i3w(A) : SLDGDADRIIIVDENGQEIDGDGILNILAQYSDICGGT--NGIVGT-QtN-sYENHYRANKIPFIRSKVGDRYVLEDLVKYGYKIGGESSGHVINLNFGTTGDGLFTAIQLLAIFSQADK 
         :                                                                                                                          
 3pdk(A) : AFDGDGDRLIAVDEKGNIVDGDQIMFICAKYMKETGQLKHNTVVSTVMSNLGFYKALEANGITSDKTAVGDRYVMEEMKRGGYNLGGEQSGHIILLDYITTGDGMLSALQLVNIMKMTKK 
           ________________________________________________________________________________________________________________________ 

           _______________370__375____________________397__402____________________________433__________                             
 3i3w(A) : PVSEFKLQGELq---QTLINVPLT-KKVAREDLQKVASDVNDVEKRLGNRGRVLLRPSGTEPVLRVv-EADDKSLATNEAEYLVEKVKQKLV                             
         :                                                                                                                          
 3pdk(A) : PLSE--LAGEMTKFPQLLVNVRVTDKKLALEN-EKIKEIIRVVEEEMNGDGRILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVKAEVG                             
           _______________373__378____________________400__405____________________________436__________                             

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.9
Translation
(A) 		-0.9
Closure
(%) 		90.4
Bending Residues
( green ) 		  370 - 373
  375 - 389
  397 - 399
  402 - 403
  433 - 434
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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