Possible Substrate Binding Protein Of Abc Transporter System

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Possible Substrate Binding Protein Of Abc Transporter System
  Conformer 1
(PDB) 		3n0x (A)
  Conformer 2
(PDB) 		3nnd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 177 0.56   20 - 136   274 - 350
2 106 9.4   137 - 247

Sequence


           ______________________________________________________________________________________________________________133_______ 
 3n0x(A) : DLKIALIYGKTGPLEAYAKQTETGLgLEYATKGTtLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNS 
         :                                                                                                                          
 3nnd(A) : DLKIALIYGKTGPLEAYAKQTETGLgLEYATKGTtLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPA----------nRYIFRTGRNS 
           ______________________________________________________________________________________________________________129_______ 

           _______________________________________________________________________________________________________247______________ 
 3n0x(A) : SQDAISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGDPLTKLQDdPKRYGIELSTGGNILPALAAYKRL 
         :                                                                                                                          
 3nnd(A) : SQDAISNAVAIGKQGVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDALKDKPGKKIIWVIWA----pLTKLQDdPKRYGIELSTGGNILPALAAYKRL 
           _______________________________________________________________________________________________________243______________ 

           ________________________________________________________________________________________________________________________ 
 3n0x(A) : PGeGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAaVVTAVQKAKSTDTEKLIAAeGeFDTPKGKvFRKEDHQALQSyHFKVKVDPAVAWAVLEPVRELKIEEnIPIKNKK 
         :                                                                                                                          
 3nnd(A) : --eGATYYYYDIPKNPINEWLVTEHQKRFNAPPDFFTAGGFSAAaVVTAVQKAKSTDTEKLIAAeGeFDTPKGKvFRKEDHQALQSyHFKVKVDPAVAWAVLEEG*************** 
           ________________________________________________________________________________________________________________________ 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		105.1
Translation
(A) 		-7.4
Closure
(%) 		13.7
Bending Residues
( green ) 		  133 - 156
  247 - 282
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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