Protein (Antigen 85-C)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Antigen 85-C)
  Conformer 1
(PDB) 		1dqy (A)
  Conformer 2
(PDB) 		1dqz (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 246 0.58   10 - 207   228 - 275
2 20 3.14   208 - 227

Sequence


           ________________________________________________________________________________________________________________________ 
 1dqy(A) : MFSRPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNA 
         :                                                                                                                          
 1dqz(A) : ***RPGLPVEYLQVPSASMGRDIKVQFQGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNA 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________204___________________226_____________ 
 1dqy(A) : AVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFR 
         :                                                                                                                          
 1dqz(A) : AVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFR 
           __________________________________________________________________________________204___________________226_____________ 

           ___________________________________________                                                                              
 1dqy(A) : DTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG                                                                              
         :                                                                                                                          
 1dqz(A) : DTYAADGGRNGVFNFPPNGTHSWPYWNEQLVAMKADIQHVLNG                                                                              
           ___________________________________________                                                                              

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		48.6
Translation
(A) 		1.5
Closure
(%) 		6.9
Bending Residues
( green ) 		  204 - 208
  226 - 236
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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