Putative Hemin Transport System, Substrate-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Putative Hemin Transport System, Substrate-Binding Protein
  Conformer 1
(PDB) 		5b58 (T)
  Conformer 2
(PDB) 		5y89 (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 1.6   134 - 139   160 - 299
2 107 1.06   47 - 133   140 - 159

Sequence


           ____________________________________________________________________________________________133___139_________________15 
 5b58(T) : **RVIVIGGALAETAFALGGAETPRYRLVGADTTCTYPDAAKRLPKVGYQRALSAEGLLSLRPDLVLASAEAGPPTAIAQVKGAGVTVTTFDERHDVESVRAKITGVAQALDVRDAGAAL 
         :                                                                                                                          
 5y89(A) : SKRVIVIGGALAETAFALGGAETPRYRLVGADTTCTYPDAAKRLPKVGYQRALSAEGLLSLRPDLVLASAEAGPPTAIAQVKGAGVTVTTFDERHDVESVRAKITGVAQALDVRDAGAAL 
           ____________________________________________________________________________________________133___139_________________15 

           9_______________________________________________________________________________________________________________________ 
 5b58(T) : LQRFDRDWQAARDAVAARVPGGAQPPRVLFVLNHTGTQALVAGQRTAADAMIRYAGARNAMQGFDHYKPLTTEALAAAAPDVVLISDEGLAAVGGHAALLATPGFGATPAGRARRVVSLD 
         :                                                                                                                          
 5y89(A) : LQRFDRDWQAARDAVAARVPGGAQPPRVLFVLNHTGTQALVAGQRTAADAMIRYAGARNAMQGFDHYKPLTTEALAAAAPDVVLISDEGLAAVGGHAALLATPGFGATPAGRARRVVSLD 
           9_______________________________________________________________________________________________________________________ 

           ___________________________                                                                                              
 5b58(T) : ALFLLGFGPRLPLAVTTLHRRLSDALA                                                                                              
         :                                                                                                                          
 5y89(A) : ALFLLGFGPRLPLAVTTLHRRLSDALA                                                                                              
           ___________________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.7
Translation
(A) 		0.6
Closure
(%) 		92.7
Bending Residues
( green ) 		  133 - 134
  139 - 141
  159 - 160
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download