Sugar Abc Transporter, Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Sugar Abc Transporter, Sugar-Binding Protein
  Conformer 1
(PDB) 		2hq0 (A)
  Conformer 2
(PDB) 		2i58 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 229 0.76   92 - 96   114 - 278   328 - 386
2 152 0.36   6 - 91   97 - 113   279 - 327

Sequence


           _________________________________________________________________________________________91_________________111_________ 
 2hq0(A) : GPSSTVTIEYFNQKKEMTKTLEEITRDFEKENPKiKVKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYGIYY 
         :                                                                                                                          
 2i58(A) : ***STVTIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYGIYY 
           _________________________________________________________________________________________91_________________111_________ 

           ________________________________________________________________________________________________________________________ 
 2hq0(A) : NKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLM 
         :                                                                                                                          
 2i58(A) : NKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLM 
           ________________________________________________________________________________________________________________________ 

           __________________________________277_______________________________________________327_________________________________ 
 2hq0(A) : TPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPLAGMTEYAFTDRHLVWLQQYWTSEADFH 
         :                                                                                                                          
 2i58(A) : TPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTAIEGVKQAGEDSPLAGMTEYAFTDRHLVWLQQYWTSEADFH 
           __________________________________277_______________________________________________327_________________________________ 

           ____________________________                                                                                             
 2hq0(A) : TLTMNYVLTGDKQGMVNDLNAFFNPMKM                                                                                             
         :                                                                                                                          
 2i58(A) : TLTMNYVLTGDKQGMVNDLNAFFNPMKM                                                                                             
           ____________________________                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.4
Translation
(A) 		0.2
Closure
(%) 		97.3
Bending Residues
( green ) 		  91 - 99
  111 - 115
  277 - 280
  327 - 333
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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