DynDom - Protein Domain Motions

Uncharacterized Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Uncharacterized Protein
Conformer 1 (PDB)	4x7p (A)
Conformer 2 (PDB)	4x7m (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	303	0.73	3 - 250 264 - 303 305 - 306 406 - 413 430 - 430 486 - 489
2	184	0.46	251 - 263 304 - 304 307 - 405 414 - 429 431 - 485

Sequence

`________________________________________________________________________________________________________________________` `4x7p(A) : MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTGTYI` `:` `4x7m(B) : MKKIFMMVHELDVNKGGMTSSMFNRSKEFYDADIPADIVTFDYKGNYDEIIKALKKQGKMDRRTKMYNVFEYFKQISNNKHFKSNKLLYKHISERLKNTIEIEESKGISRYFDITTRTYI` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `4x7p(A) : AYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHK` `:` `4x7m(B) : AYIRKSKSEKVIDFFKDNKRIERFSFIDNKVHMKETFNVDNKVCYQVFYDEKGYPYISRNINANNGAVGKTYVLVNKKEFKNNLALCVYYLEKLIKDSKDSIMICDGPGSFPKMFNTNHK` `________________________________________________________________________________________________________________________` `_______250_______260________________________________________303_________________________________________________________` `4x7p(A) : NAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSV` `:` `4x7m(B) : NAQKYGVIHVNHHENFDDTGAFKKSEKYIIENANKINGVIVLTEAQRLDILNQFDVENIFTISNFVKIHNAPKHFQTEKIVGHISRMVPTKRIDLLIEVAELVVKKDNAVKFHIYGEGSV` `_______250_______260________________________________________303_________________________________________________________` `________________________________________403_______413_____________429_________________________________________________48` `4x7p(A) : KDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYST` `:` `4x7m(B) : KDKIAKMIEDKNLERNVFLKGYTTTPQKCLEDFKLVVSTSQYEGQGLSMIEAMISKRPVVAFDIKYGPSDFIEDNKNGYLIENHNINDMADKILQLVNNDVLAAEFGSKARENIIEKYST` `________________________________________403_______413_____________429_________________________________________________48` `1____________` `4x7p(A) : ESILEKWLNLFNS` `:` `4x7m(B) : ESILEKWLNLFNS` `1____________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	9.2
Translation (A)	0.5
Closure (%)	81.9
Bending Residues ( green )	250 - 251 260 - 264 303 - 309 403 - 406 413 - 414 429 - 432 481 - 489
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

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