Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tata-Binding Protein (Tbp, C-Terminal 179 Amino Acids)
  Conformer 1
(PDB) 		1tbp (A)
  Conformer 2
(PDB) 		1qn3 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 90 0.92   69 - 158
2 86 0.61   63 - 68   159 - 238

Sequence


           _________68_______________________________________________________________________________________158___________________ 
 1tbp(A) : ***MGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAF 
         :                                                                                                                          
 1qn3(A) : KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAY 
           _________26_______________________________________________________________________________________116___________________ 

           _______________________________________________________________                                                          
 1tbp(A) : SHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM                                                          
         :                                                                                                                          
 1qn3(A) : SHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI                                                          
           _______________________________________________________________                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.3
Translation
(A) 		0.3
Closure
(%) 		98.4
Bending Residues
( green ) 		  68 - 69
  158 - 159
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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