T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name T4 Lysozyme
  Conformer 1
(PDB) 		2lzm (A)
  Conformer 2
(PDB) 		150l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 99 0.43   3 - 11   73 - 162
2 61 0.49   12 - 72

Sequence


           _________11___________________________________________________________72________________________________________________ 
 2lzm(A) : MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRM 
         :                                                                                                                          
 150l(A) : MNIFEILRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRM 
           _________11___________________________________________________________72________________________________________________ 

           ____________________________________________                                                                             
 2lzm(A) : LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL                                                                             
         :                                                                                                                          
 150l(A) : LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL                                                                             
           ____________________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.2
Translation
(A) 		0.1
Closure
(%) 		98.3
Bending Residues
( green ) 		  11 - 12
  72 - 73
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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