Transcriptional Regulatory Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulatory Protein
  Conformer 1
(PDB) 		2ivm (A)
  Conformer 2
(PDB) 		2vbw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 92 0.45   57 - 148
2 51 0.31   6 - 56

Sequence


           ___________________________________________________56___________________________________________________________________ 
 2ivm(A) : ALDDIDRILVRELAADGRGTLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLEHIEEVESCYSVAGEESYVLLVRVASARALEDLLQ 
         :                                                                                                                          
 2vbw(A) : ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLEHIEEVESCYSVAGEESYVLLVRVASARALEDLLQ 
           ___________________________________________________56___________________________________________________________________ 

           ___________________________                                                                                              
 2ivm(A) : RIRTTANVRTRSTIILNTFYSDRQHIP                                                                                              
         :                                                                                                                          
 2vbw(A) : RIRTTANVRTRSTIILNTFYSDRQHIP                                                                                              
           ___________________________                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.9
Translation
(A) 		-0.2
Closure
(%) 		99.3
Bending Residues
( green ) 		  56 - 57
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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