DynDom - Protein Domain Motions

Udp-Galactose 4-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-Galactose 4-Epimerase
Conformer 1 (PDB)	1ek6 (B)
Conformer 2 (PDB)	1i3m (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	215	0.63	4 - 136 148 - 185 191 - 197 242 - 269 310 - 312 314 - 315 322 - 322 341 - 341 343 - 344
2	126	0.51	137 - 147 186 - 190 198 - 241 270 - 309 313 - 313 316 - 321 323 - 340 342 - 342

Sequence

`________________________________________________________________________________________________________________________` `1ek6(B) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA` `:` `1i3m(A) : AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKA` `________________________________________________________________________________________________________________________` `____________136________147___________________________________185__190____197_________________________________________241` `1ek6(B) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY` `:` `1i3m(A) : HGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNVVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY` `____________136________147___________________________________185__190____197_________________________________________241` `_________________________269_____________________________________309_________321________________340________` `1ek6(B) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT**` `:` `1i3m(A) : IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGTQA` `_________________________269_____________________________________309_________321________________340________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	7.3
Translation (A)	-0.2
Closure (%)	99.9
Bending Residues ( green )	136 - 137 147 - 148 185 - 186 190 - 191 197 - 198 241 - 242 269 - 270 309 - 310 312 - 316 321 - 323 340 - 344
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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