Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Subunit 2
  Conformer 1
(PDB) 		1fto (A)
  Conformer 2
(PDB) 		2cmo (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 148 0.57   17 - 42   45 - 49   110 - 215   248 - 258
2 103 0.49   8 - 16   43 - 44   50 - 109   216 - 247

Sequence


           __________16________________________42________________________________________________________________109_______________ 
 1fto(A) : TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA 
         :                                                                                                                          
 2cmo(A) : TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESA 
           __________16________________________42________________________________________________________________109_______________ 

           ________________________________________________________________________________________215_____________________________ 
 1fto(A) : EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ 
         :                                                                                                                          
 2cmo(A) : EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ 
           ________________________________________________________________________________________215_____________________________ 

           247______________                                                                                                        
 1fto(A) : GLLDKLKNKWWYDKGEC                                                                                                        
         :                                                                                                                          
 2cmo(A) : GLLDKLKNKWWYDKGEC                                                                                                        
           247______________                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.4
Translation
(A) 		-0.1
Closure
(%) 		52.7
Bending Residues
( green ) 		  16 - 17
  42 - 50
  109 - 110
  215 - 216
  247 - 251
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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