Gtp-Binding Protein Lepa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gtp-Binding Protein Lepa
  Conformer 1
(PDB) 		3cb4 (C)
  Conformer 2
(PDB) 		3cb4 (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 239 0.49   3 - 77   90 - 196   200 - 205   207 - 208   210 - 288
2 92 0.55   78 - 89   344 - 346   401 - 401   403 - 470   479 - 484   499 - 500
3 190 0.31   197 - 199   206 - 206   209 - 209   289 - 343   347 - 400   402 - 402   471 - 478   485 - 498   501 - 553

Sequence


           _____________________________________________77__________89_____________________________________________________________ 
 3cb4(C) : MKNIRNFSIIAHIsTLSDRIIQICGGqSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDI 
         :                                                                                                                          
 3cb4(E) : MKNIRNFSIIAHIsTLSDRIIQICGGqSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDI 
           _____________________________________________77__________89_____________________________________________________________ 

           ___________________________________________196______205_________________________________________________________________ 
 3cb4(C) : VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPV 
         :                                                                                                                          
 3cb4(E) : VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPV 
           ___________________________________________196______205_________________________________________________________________ 

           _______________288____________________________________________________343_______________________________________________ 
 3cb4(C) : GDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKL 
         :                                                                                                                          
 3cb4(E) : GDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKL 
           _______________288____________________________________________________343_______________________________________________ 

           _______400___________________________________________________________________470_____478___484___________498____________ 
 3cb4(C) : PAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRGRE 
         :                                                                                                                          
 3cb4(E) : PAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRGRE 
           _______400___________________________________________________________________470_____478___484___________498____________ 

           _____________________________________________                                                                            
 3cb4(C) : LVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYG                                                                            
         :                                                                                                                          
 3cb4(E) : LVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYG                                                                            
           _____________________________________________                                                                            

Morph
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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 7.2 -0.1 36.5   77 - 85   89 - 90 Bending Region Analysis
1 3 5.7 0.1 93.9   196 - 197   199 - 200   205 - 210   288 - 289 Bending Region Analysis
2 3 3.8 -0.1 92.8   343 - 344   346 - 347   400 - 403   470 - 472   478 - 479   484 - 485   498 - 501 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification: Hinge

PyMOL Script

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