Protease/helicase Ns3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protease/helicase Ns3
  Conformer 1
(PDB) 		1a1v (A)
  Conformer 2
(PDB) 		8ohm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 286 0.96   192 - 326   434 - 449   486 - 622
2 139 0.78   327 - 433   450 - 485

Sequence


           ________________________________________________________________________________________________________________________ 
 1a1v(A) : PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGG-sGGAYDIIICDECHSTDATSILGIGTVLDQ 
         :                                                                                                                          
 8ohm(A) : PPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGVYMSKAHGIDPNIRTGVRAITTGGPITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTSILGIGTVLDQ 
           ________________________________________________________________________________________________________________________ 

           ______________326_______________________________________________________________________________________________________ 
 1a1v(A) : AETAGARLVVLATATPPGSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDAL---fTGDFDSVIDCN 
         :                                                                                                                          
 8ohm(A) : AETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEVIRGGRHLIFCHSKKKCDELAAKLSALGLNAVAYYRGLDVSVIPTSGDVVVVATDALMTGYTGDFDSVIDCN 
           ______________326_______________________________________________________________________________________________________ 

           _433____________448__________________________________485________________________________________________________________ 
 1a1v(A) : T-vTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVAPGERPSGMFDSSVLCECYDAG-aWYELTPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQ 
         :                                                                                                                          
 8ohm(A) : TCVTQTVDFSLDPTFTIDTTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQ 
           _433____________448__________________________________485________________________________________________________________ 

           ___________________________________________________________________________                                              
 1a1v(A) : TKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMTCMS                                              
         :                                                                                                                          
 8ohm(A) : TKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKSLTRLKPTLHGPTPLLYRLGALQNEVTLTHPVTKFIMACMS                                              
           ___________________________________________________________________________                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.2
Translation
(A) 		-0.5
Closure
(%) 		98.7
Bending Residues
( green ) 		  326 - 327
  433 - 434
  448 - 450
  485 - 486
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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