DynDom - Protein Domain Motions

Lipopolysaccharide 1,6-Galactosyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Lipopolysaccharide 1,6-Galactosyltransferase
Conformer 1 (PDB)	5n7z (A)
Conformer 2 (PDB)	5n80 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	242	0.25	3 - 3 27 - 36 113 - 117 120 - 131 136 - 158 162 - 348 351 - 354
2	110	0.3	4 - 26 37 - 112 118 - 119 132 - 135 159 - 161 349 - 350

Sequence

`___3_____________________26___________________________________________________________________________________112__117__` `5n7z(A) : *MKIAFIGEAVSGFGGMETVISNVIHTFENSSPKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSQWLKETSPDIVICIDVISCLYANKARKKSGKHFTIFSWPH` `:` `5n80(A) : AMKIAFIGEAVSGFGGMETVISNVIHTFENSSPKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSQWLKETSPDIVICIDVISCLYANKARKKSGKHFTIFSWPH` `___3_____________________26___________________________________________________________________________________112__117__` `_________131_135____________________158_________________________________________________________________________________` `5n7z(A) : FSLDHKKHAECITYADYHLAISSGIKEQIMARGISAQDISVVYNPVSIKTVIVPPPERDKPAVFLYVGRLKFEGQKRVKDLFDGLARTTGEWQLHIIGDGSDFEKCQAYSRELGIEQRVI` `:` `5n80(A) : FSLDHKKHAECITYADYHLAISSGIKEQIMARGISAQDISVVYNPVSIKTVIVPPPERDKPAVFLYVGRLKFEGQKRVKDLFDGLARTTGEWQLHIIGDGSDFEKCQAYSRELGIEQRVI` `_________131_135____________________158_________________________________________________________________________________` `__________________________________________________________________________________________________________348_________` `5n7z(A) : WYGWQSAPWQVVQQKIKNVTALLLTSAFEGFPMTLLEAMSYGIPCISSDCMSGPRDMIKPGLNGELYTPGAIDDFVGHLNRVISGEVKYQHDIIPGTIERFYDVLYFKNFNNAIFSKL` `:` `5n80(A) : WYGWQSAPWQVVQQKIKNVTALLLTSAFEGFPMTLLEAMSYGIPCISSDCMSGPRDMIKPGLNGELYTPGAIDDFVGHLNRVISGEVKYQHDIIPGTIERFYDVLYFKNFNNAIFSKL` `__________________________________________________________________________________________________________348_________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	2.4
Translation (A)	0.0
Closure (%)	46.1
Bending Residues ( green )	3 - 6 26 - 37 112 - 113 117 - 120 131 - 132 135 - 136 158 - 159 161 - 162 348 - 351
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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