Maf-Like Protein Ycef

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maf-Like Protein Ycef
  Conformer 1
(PDB) 		4p0u (A)
  Conformer 2
(PDB) 		4p0e (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 114 0.5   5 - 73   102 - 122   163 - 186
2 68 0.44   74 - 101   123 - 162

Sequence


           ______________________________________________________________________73_________________________101__________________12 
 4p0u(A) : *SLYLASGSPRRQELLAQLGVTFERIVTGIEAQRQPQESAQQYVVRLAREKARAGVAQTAKDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVALADSQHILDCLVV 
         :                                                                                                                          
 4p0e(A) : TSLYLASGSPRRQELLAQLGVTFERIVTGIEAQRQPQESAQQYVVRLAREKARAGVAQTAKDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQVMTAVALADSQHILDCLVV 
           ______________________________________________________________________73_________________________101__________________12 

           2_____________________________________162____________________________                                                    
 4p0u(A) : TDVTFRTLTDEDIAGYVASDEPLDKAGAYGIQGLGGCFVRKINGSYHAVVGLPLVETYELLSNFNAL**                                                    
         :                                                                                                                          
 4p0e(A) : TDVTFRTLTDEDIAGYVASDEPLDKAGAYGIQGLGGCFVRKINGSYHAVVGLPLVETYELLSNFNALRE                                                    
           2_____________________________________162____________________________                                                    

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.7
Translation
(A) 		0.6
Closure
(%) 		63.4
Bending Residues
( green ) 		  73 - 74
  101 - 102
  122 - 123
  162 - 163
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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