Major Envelope Protein E

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Major Envelope Protein E
  Conformer 1
(PDB) 		1oke (A)
  Conformer 2
(PDB) 		3p54 (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 355 2.54   8 - 264   285 - 387
2 20 2.79   265 - 284

Sequence


           ________________________________________________________________________________________________________________________ 
 1oke(A) : MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFT 
         :                                                                                                                          
 3p54(A) : FNCLGMGNRDFIEGASGATWVDLVLEGDSCLTIMANDKPTLDVRMINIEASQLAEVRSYCYHASVTDISTVARCPTTGEAHNEKRADSSYVCKQGFTDRGWGNGCGFFGKGSIDTCAKFS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1oke(A) : CKKNMEGKIVQPENLEYTVVITPH---SGEEHAVGNDTGKHGK----EVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQ 
         :                                                                                                                          
 3p54(A) : CTSKAIGRTIQPENIKYKVGIFVHGTTTSENH--GNYSAQVGASQAAKFTVTPNAPSVTLKLGDYGEVTLDCEPRSGLNTEAFYVMTVGSKSFLVHREWFHDLALPWTSPSSTA---WRN 
           ________________________________________________________________________________________________________________________ 

           ____________________________264_________________284_____________________________________________________________________ 
 1oke(A) : KETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPF-EIMDLEKRHVLGRLI 
         :                                                                                                                          
 3p54(A) : RELLMEFEGAHATKQSVVALGSQEGGLHQALAGAIVVEYSSSVMLTSGHLKCRLKMDKLALKGTTYGMCTEKFSFAKNPVDTGHGTVVIELSYSGSDGPCKIPIVSVASLNDMTPVGRLV 
           ____________________________266_________________286_____________________________________________________________________ 

           _________________________________________________                                                                        
 1oke(A) : TVNPIV--TEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK*****                                                                        
         :                                                                                                                          
 3p54(A) : TVNPFVATSSANSKVLVEMEPPFGDSYIVVGRGDKQINHHWHKAGSTLG                                                                        
           _________________________________________________                                                                        

Morph
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		36.2
Translation
(A) 		-0.7
Closure
(%) 		48.9
Bending Residues
( green ) 		  264 - 265
  284 - 285
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download