Mhc Class I H-2dd Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mhc Class I H-2dd Heavy Chain
  Conformer 1
(PDB) 		1vac (A)
  Conformer 2
(PDB) 		2mha (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 179 0.94   6 - 183   264 - 264
2 82 0.97   184 - 263   265 - 266

Sequence


           ________________________________________________________________________________________________________________________ 
 1vac(A) : GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 
         :                                                                                                                          
 2mha(A) : GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDG 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________183_________________________________________________________ 
 1vac(A) : CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 
         :                                                                                                                          
 2mha(A) : CDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT 
           ____________________________________________________________183_________________________________________________________ 

           ____________________263___________                                                                                       
 1vac(A) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRW                                                                                       
         :                                                                                                                          
 2mha(A) : FQKWASVVVPLGKEQYYTCHVYHQGLPEPL****                                                                                       
           ____________________263___________                                                                                       

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.9
Translation
(A) 		1.4
Closure
(%) 		72.4
Bending Residues
( green ) 		  183 - 184
  263 - 265
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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