Nad Dependent Epimerase/dehydratase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nad Dependent Epimerase/dehydratase
  Conformer 1
(PDB) 		3wmx (B)
  Conformer 2
(PDB) 		3wmw (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 250 1.15   10 - 25   37 - 59   61 - 61   64 - 66   74 - 311
2 23 0.62   8 - 9   26 - 36   60 - 60   62 - 63   67 - 73

Sequence


           ____9______________25_________36_59_________________________66_____73___________________________________________________ 
 3wmx(B) : *PKILIVGANGQIGSELALALAERYGRTNVITSDVVPTGRHVHLTHEMLNATDRGELATVVERHGITQVYLLAAALSATGEKAPQWAWNLNMTSLLNVLELARQTGLERVFWPSSIAAFG 
         :                                                                                                                          
 3wmw(B) : KPKILIVG--gQIGSELALALAERYGRTNVITSD--------------------gELATVVERHGITQVYLLAa---------PQWAWNLNMTSLLNVLELARQTGLERVFWPSSIAAFG 
           ____9______________25_________36_59_________________________66_____73___________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3wmx(B) : PTTPAGQTPQKTVMEPTTVYGISKQAGEGWCRWYHANHGVDVRSVRYPGLISHKTPPGGGTTDYAVDIFHAAVTGEPYTCFLKEDEALPMMYMPDAIRATIELMEAPADKLSERGSYNIA 
         :                                                                                                                          
 3wmw(B) : PTTPAGQTPQKTVMEPTTVYGISKQAGEGWCRWYHANHGVDVRSVRYPGLISHKTPPGGGTTDYAVDIFHAAVTGEPYTCFLKEDEALPMMYMPDAIRATIELMEAPADKLSERGSYNIA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________                                                    
 3wmx(B) : GMSFTPAQIAAAIREQVPGFQIRYEPDYRQAIAQGWPDSIDDSVARADWGWKAQYGLKEMVADMLANLK                                                    
         :                                                                                                                          
 3wmw(B) : GMSFTPAQIAAAIREQVPGFQIRYEPDYRQAIAQGWPDSIDDSVARADWGWKAQYGLKEMVADMLANLK                                                    
           _____________________________________________________________________                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.8
Translation
(A) 		0.0
Closure
(%) 		69.3
Bending Residues
( green ) 		  9 - 10
  25 - 26
  36 - 37
  59 - 64
  66 - 67
  73 - 74
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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