N-Methyl-D-Aspartate Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name N-Methyl-D-Aspartate Receptor Subunit 1
  Conformer 1
(PDB) 		1pb8 (A)
  Conformer 2
(PDB) 		1y1m (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 173 0.91   7 - 145   240 - 283
2 94 0.56   146 - 239

Sequence


           ________________________________________________________________________________________________________________________ 
 1pb8(A) : TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNrHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINTE 
         :                                                                                                                          
 1y1m(A) : *RLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGP---tVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNE 
           ________________________________________________________________________________________________________________________ 

           ____________145___________________________________________________________________________________________239___________ 
 1pb8(A) : RAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 
         :                                                                                                                          
 1y1m(A) : RAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 
           ____________145___________________________________________________________________________________________239___________ 

           __________________________________________                                                                               
 1pb8(A) : GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS                                                                               
         :                                                                                                                          
 1y1m(A) : GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV*******                                                                               
           __________________________________________                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.4
Translation
(A) 		0.0
Closure
(%) 		99.5
Bending Residues
( green ) 		  145 - 146
  239 - 240
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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