Phospho-2-Dehydro-3-Deoxyheptonate Aldolase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phospho-2-Dehydro-3-Deoxyheptonate Aldolase
  Conformer 1
(PDB) 		1vr6 (A)
  Conformer 2
(PDB) 		1vr6 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 266 0.42   67 - 336
2 67 0.25   0 - 66

Sequence


           _____________________________________________________________________66_________________________________________________ 
 1vr6(A) : HHHHHMIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAH 
         :                                                                                                                          
 1vr6(B) : *HHHHMIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAH 
           _____________________________________________________________________66_________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1vr6(A) : FLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILC 
         :                                                                                                                          
 1vr6(B) : FLSELGVKVLRGGAYKPR----sFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILC 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________                  
 1vr6(A) : ERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN                  
         :                                                                                                                          
 1vr6(B) : ERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN                  
           _______________________________________________________________________________________________________                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.2
Translation
(A) 		-0.3
Closure
(%) 		16.4
Bending Residues
( green ) 		  66 - 67
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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